Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs67644743 chr17:28907303 AAT/A 1.75E-5 403 9.8 16.6 14.22 KM Plot
STAD rs67808065 chr8:17885825 TATC/T 4.32E-5 397 12.18 16.37 14.23 KM Plot
STAD rs6785206 chr3:128412024 A/G 2.95E-5 403 5.38 13.97 14.55 KM Plot
STAD rs6795162 chr3:118471233 T/C 1.17E-5 404 14.13 17.43 2.7 KM Plot
STAD rs694945 chr17:72894297 C/T 9.57E-6 404 6.27 19.6 14.22 KM Plot
STAD rs696240 chr1:235641745 G/A 3.34E-5 398 13.27 14.67 15.88 KM Plot
STAD rs6988876 chr8:26151724 C/T 1.73E-7 406 14.55 12.9 4.07 KM Plot
STAD rs7005099 chr8:26160015 C/T 2.03E-5 400 14.65 12.6 6.4 KM Plot
STAD rs704711 chr1:235629802 G/A 4.7E-5 399 13.27 14.67 15.6 KM Plot
STAD rs704712 chr1:235630328 G/C 4.7E-5 399 13.27 14.67 15.6 KM Plot
STAD rs704715 chr1:235636284 A/G 3.18E-5 397 13.27 14.95 15.88 KM Plot
STAD rs704716 chr1:235637421 G/A 3.34E-5 398 13.27 14.67 15.88 KM Plot
STAD rs704720 chr1:235667186 G/A 3.05E-5 388 13.4 15.23 15.6 KM Plot
STAD rs704721 chr1:235667217 C/G 3.05E-5 388 13.4 15.23 15.6 KM Plot
STAD rs709068 chr7:148981851 G/A 4.52E-5 405 14.22 16.38 3.43 KM Plot